Priks H., Butelmann T., Illarionov A., Johnston T.G., Fellin C., Tamm T., Nelson A., Kumar R., Lahtvee P.J. (2020). Physical confinement impacts cellular phenotype within living materials. bioRxiv 2020.03.25.004887 [link]

Sánchez B.J., Lahtvee P.J., Campbell K., Kasvandik S., Yu R., Domenzain I., Zelezniak A., Nielsen J. (2020). Benchmarking accuracy and precision of intensity-based absolute quantification of protein abundances in Saccharomyces cerevisiae. bioRxiv [link]

Kumar R., Lahtvee P.J. (2020). Proteome overabundance enables respiration but limitation onsets carbon overflow. bioRxiv [link]

Lopes H.J.S., Bonturi N., Miranda E.A. (2020). Rhodotorula toruloides Single Cell Oil Production Using Eucalyptus urograndis Hemicellulose Hydrolysate as a Carbon Source. Energies 13(4), 795 [link]

Lopes H.J.S., Bonturi N., Kerkhoven E.J., Miranda E.A., Lahtvee P.J. (2020). C/N ratio and carbon source-dependent lipid production profiling in Rhodotorula toruloides. Applied Microbiology and Biotechnology [link]

Rocha-Meneses L, Otor OF, Bonturi N, Orupõld K, Kikas T (2020). Bioenergy Yields from Sequential Bioethanol and Biomethane Production: An Optimized Process Flow. Sustainability, 12, 272. [link]


Rocha-Meneses L, Ferreira JA, Bonturi N, Orupõld K, Kikas T (2019). Enhancing Bioenergy Yields from Sequential Bioethanol and Biomethane Production by Means of Solid-Liquid Separation of the Substrates. Energies, 12, 3683. [link]


Lahtvee PJ (2018). Engineering efficient yeast-based cell factories. Proceedings of the 31st VH-Yeast Conference: Advances in Science and Industrial Production of Baker’s Yeast: Yeas as a cell factory, Leuven, Belgium, Ed. Versuchsanstalt der Hefeindustrie e.V., 49−60.


Lahtvee PJ, Sánchez BJ, Smialowska A, Kasvandik S, Elsemman I, Gatto F, Nielsen J (2017) Absolute quantification of protein and mRNA abundances demonstrate variability in gene-specific translation efficiency in yeast. Cell Systems 4:495-504.e5[link]

Sánchez BJ, Zhang C, Nilsson A, Lahtvee PJ, Kerkhoven EJ, Nielsen J (2017) Improving the phenotype predictions of a yeast genome-scale metabolic model by incorporating enzymatic constraints. Molecular Systems Biology, 13:935 [link]

Hermano Santos Diniz R, Villada JC, Tocantins Alvim MC, Pereira Vidigal PM, Vieira NM, Lamas-Maceiras M, Esperanza Cerdán M, González-Siso MI, Lahtvee PJ, Batista da Silveira W (2017) Transcriptome analysis of the thermotolerant yeast Kluyveromyces marxianus CCT 7735 under ethanol stress. Applied Microbiology and Biotechnology, doi:10.1007/s00253-017-8432-0 [link]

Babazadeh R*, Lahtvee PJ*, Adiels CB, Goksör M, Nielsen J, Hohmann S (2017) The yeast osmostress response is carbon source dependent. Scientific Reports, 7, 990. [link]

Bonturi N, Crucellob A, Carvalho Vianab AJ, Alves Miranda E (2017) Microbial oil production in sugarcane bagasse hemicellulosic hydrolysate without nutrient supplementation by a Rhodosporidium toruloides adapted strain. Process Biochemistry, 57:16-25. [link]


Lahtvee PJ, Kumar R, Hallström BM, Nielsen J (2016) Adaptation to different types of stress converge on mitochondrial metabolism. Molecular Biology of the Cell 27: 2505-2514. [link]


Kerkhoven EJ*, Lahtvee PJ*, Nielsen J (2015) Applications of computational modeling in metabolic engineering of yeast. FEMS Yeast Research 15: 1-13. [link]

Kumar R, Lahtvee PJ, Nielsen J (2015) Systems biology: Developments and Applications. Molecular Mechanisms in Yeast Carbon Metabolism, Editors: J. Piskur and C. Compagno. 83-96. [link]


Lahtvee PJ#, Seiman A, Arike L, Adamberg K, Vilu R (2014) Protein turnover forms one of the highest maintenance costs in Lactococcus lactis. Microbiology 160: 1501-1512. [link]